If for whatever reason qmail is started twice or already started shut it down manually...

 # qmailctl stop
 # ps aux | grep svscan | grep -v grep
   root        6398  0.0  0.0   4416   912 pts/0    S    13:32   0:00 svscan
 # kill 6398
 # ps aux | grep supervise | grep -v grep
   root        6400  0.0  0.0   4248   916 pts/0    S    13:32   0:00 supervise send
   root        6401  0.0  0.0   4248   880 pts/0    S    13:32   0:00 supervise log
   root        6402  0.0  0.0   4248   828 pts/0    S    13:32   0:00 supervise smtp
   root        6403  0.0  0.0   4248   916 pts/0    S    13:32   0:00 supervise log
   root        6404  0.0  0.0   4248   916 pts/0    S    13:32   0:00 supervise smtps
   root        6405  0.0  0.0   4248   824 pts/0    S    13:32   0:00 supervise log
   root        6406  0.0  0.0   4248   928 pts/0    S    13:32   0:00 supervise submission
   root        6407  0.0  0.0   4248   824 pts/0    S    13:32   0:00 supervise log
 # kill 6400 6401 6402 6403 6404 6405 6406 6407
 # ps aux | grep tcpserver | grep -v grep 
   vpopmail    6411  0.0  0.0   6540  1576 pts/0    S    13:32   0:00 /usr/bin/tcpserver -v -R -H -l host.domain.tld -x ... /var/qmail/bin/qmail-smtpd ...
   vpopmail    6413  0.0  0.0   4416   860 pts/0    S    13:32   0:00 /usr/bin/tcpserver -v -R -H -l host.domain.tld -x ... /var/qmail/bin/qmail-smtpd ...
   vpopmail    6415  0.0  0.0   4416   960 pts/0    S    13:32   0:00 /usr/bin/tcpserver -v -R -H -l host.domain.tld -x ... /var/qmail/bin/qmail-smtpd ...
 # kill 6411 6413 6415
 # ps aux | grep qmail-send | grep -v grep
   qmails      6408  0.0  0.0   8664   976 pts/0    S    13:32   0:00 qmail-send
 # kill 6408